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Tutorials and Examples

Analyzing fluorescence microscopy images with ImageJ
Area Measurements and Particle Counting (PDF)
Automated Segmentation and Morphometry (PDF)
Batch Processing in ImageJ (PDF)
EMBL/CMCI ImageJ Course Textbooks
ImageJ Basics (PDF)
Image Processing with ImageJ (PDF)
ImageJ Tutorial (PPT) and Example Images
ImageJ Workshop (manuscript, slides and exercises)
Introduction to Astronomical Image Processing
Introduction to ImageJ
Video Tutorial for Beginners
Video Tutorial for Astronomers
Visualizing with ImageJ (Make Magazine) (PDF)
DNA Contour Length Measurement
Dot Blot Analysis
FFT Filtering
FFT Measurements
How-tos on ImageJ Documentation Wiki
Optical Density Calibration
Quantifying Stained Liver Tissue

Vulnerability Disclosure